Attach fit info and tables to a fit object, e.g. from model fit or Pharmpy grid search final results

Usage

attach_fit_info(
  fit,
  model,
  fit_folder,
  output_file = "run.lst",
  is_sim_model = FALSE,
  verbose = TRUE
)

Arguments

fit: pharmpy fit object
model: pharmpy model object or NONMEM model code (character) or path to NONMEM model file.
fit_folder: Folder the run was executed in, holding the output tables and the estimation output file.
output_file: NONMEM output file, default is run.lst
is_sim_model: Is fit the result of a simulation rather than an estimation? Simulation results have no fit summary and no residuals to repair.
verbose: verbose output?

Value

The fit object with the model, the output tables and (for estimation runs) a fit summary attached as the model, tables and info attributes, and with residuals rebuilt into a joinable frame (see the Value section of run_nlme()).

Note that for a Pharmpy fit this is a new object — ModelfitResults is a frozen dataclass, so replacing residuals means replacing the object. Attributes already set on the fit passed in are carried over, but any reference the caller still holds points at the un-repaired fit.