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Create a Pharmpy model object from a NONMEM report file (.lst/.res)

create_model_from_output.Rd

For the case where only a NONMEM report file is available and the .ext file (from which pharmpy normally reads final estimates) is missing. Reads the embedded control stream and applies the final parameter estimates parsed from the report's FINAL PARAMETER ESTIMATE section.

Usage

create_model_from_output(output_file, data = NULL, save_as = NULL, verbose = TRUE)

Arguments

output_file

path to a NONMEM report file (.lst, .res, ...).

data

optional dataset (filename or data.frame) passed to create_model_from_file().

save_as

optional path to write the resulting NONMEM model code to. Default NULL (return the model object only).

verbose

verbose output. Default TRUE.

Value

a Pharmpy model object.

Details

Internally the parsed estimates are written to a synthetic .ext file and fed through the existing create_model_from_file() path, so pharmpy handles the NONMEM-name to parameter-name mapping.

Precision: estimates recovered from a report file are rounded to ~3 significant figures (see parse_output()). Use an .ext file with create_model_from_file() when full precision is required.

See also

parse_output(), create_model_from_file()