NONMEM output table import function — read_table

Quickly import NONMEM output tables into R. Function taken from modelviz package by Benjamin Guiastrennec. When both skip and header are NULL, read_nmtab will automatically detect the optimal settings to import the tables. When more than one files are provided for a same NONMEM run, they will be combined into a single data.frame.

Usage

read_table_nm(
  file = NULL,
  skip = NULL,
  header = NULL,
  rm_duplicates = FALSE,
  nonmem_tab = TRUE,
  subproblems = FALSE
)

Arguments

file: full file name
skip: number of lines to skip before reading data
header: logical value indicating whether the file contains the names of the variables as its first line
rm_duplicates: logical value indicating whether duplicated columns should be removed
nonmem_tab: logical value indicating to the function whether the file is a table or a nonmem additional output file.
subproblems: keep the simulation subproblems apart. A table written by a $SIMULATION record with SUBPROBLEMS > 1 holds one block of rows per subproblem, each introduced by a repeated TABLE NO. header. By default those headers are discarded and the blocks are returned as one undivided concatenation. With subproblems = TRUE the table is split on them instead and a 1-based .subproblem column is added. Only supported for a single file and nonmem_tab = TRUE.

Value

A data.frame

Examples

if (FALSE) { # \dontrun{
data <- read_table_nm(file = '../models/pk/sdtab101')
} # }