Package index • luna

All functions

check_llm_key(): Check presence of LLM API key
create_cache(): Create a cache environment to store settings for project and system
find_file_with_fallback(): Find a file(s) from a model run with a potential fallback
get_all_results(): helper function to extract all fit results based on vector of model files
get_flag_from_config(): Get a binary value from config, based on path
get_luna_config(): Get luna config, either from global config file, or from project config
get_status(): Get the status of a run
get_table_for_plots(): Get table for basic GOF plots based on run id
get_time_ago(): Get time to now since a given date, in character
get_time_last_updated_file(): Get date/time stamp for last update to file
get_time_last_updated_folder(): Get a timestamp for when the last update was made to any file in a folder Will look only 1 level deep.
get_tools_info(): For a given run, get info on what folders are available for selected Pharmpy or PsN tools
ifelse0(): ifelse function but then based on whether value is NULL or not
insert_entry(): The reverse of pluck_entry, insert_entry() inserts an entry into an unnamded outer list, based on an element in the inner list.
is_luna_cache_available(): Check if luna cache is available / loaded
is_run_as_job(): Checks config if should run as job
log_add(): Add event to log
log_get_last_event(): Get last event from log, as list object
luna: luna package
luna_cache_get(): Get element from active project Just a convenience wrapper with error checking
luna_check(): Syntax-check a NONMEM model
luna_clone(): Clone model
luna_compare(): Compare basic run info for 2 or more model runs
luna_config(): Edit luna config file in editor, e.g. RStudio
luna_dataset(): Get data from a model
luna_diff(): Show a diff between two models
luna_edit(): Edit model in editor, e.g. RStudio
luna_edit_project(): Edit luna config file in editor, e.g. RStudio
luna_gof(): Creates a ggplot2 panel object with basic goodness of fit plots
luna_help(): Ask AI agent to help
luna_ind(): Creates a ggplot2 plot with predictions and observations, split by subject
luna_info(): Show info for a model run
luna_list(): List runs in current project
luna_load_project(): Load a project from yaml and gather results. Project is then stored/updated in .luna_cache
luna_log(): Show a log of events (actions and errors)
luna_new_project(): Create a new project folder with template YAML project file
luna_note(): Annotate a run Either add a note or clear notes from a run
luna_project_templates(): Show available templates
luna_run(): Run a NONMEM model
luna_sync(): Synchronize (re-load) luna project
luna_tables(): Get tables from a model / run
luna_tag(): Add a tag to a run Either add a tag or clear tags from a run
luna_tool(): Run external tools (e.g. diagnostics) on models or run outputs This can be used e.g. for bootstraps and VPCs. The function is implemented in a modular way so that it can be easily extended.
luna_xpose(): Read tables for a model and parse into an Xpose database
new_project_from_template(): Create a new project object based on a predefined template
pluck_entry(): Pluck an inner list element from an unnamed outer list, where an element matches (default name is "id") a specific value. Analogue to _.pluck() in JS/underscore
print(<luna.run_table>): Prints a list of models / runs in project
read_yaml_safe(): Safe way to read YAML
replace_list_elements(): Replace elements in a list, based on elements in a second list
runs_as_table(): Convert runs in a project object to a data.frame
save_project(): Save a project to a YAML file
truncate_columns(): Apply column width truncation based on console width and relative width specs
update_cache(): Update luna project cache
validate_id(): Validate id