Function reference • PKPDposterior

All functions

get_mcmc_posterior(): Draw samples from the posterior given a Stan/Torsten model and patient data

get_parameter_tables(): Get parameter tables from posterior and prior

load_model(): Initialize a model If model is not compiled yet, then compile it. Otherwise, use the binary.

new_ode_function(): Generates the ODE function that is used in a Stan/Torsten model

new_stan_data(): Create a data object for use in get_mcmc_posterior()

new_stan_model(): Create a new stan model using a template

nonmem_to_stan_data(): Reshape NONMEM data into PKPDposterior-ready or Stan-ready data

plot_params(): Plot posterior distributions of model parameters If the model also supplies prior parameters, specified e.g. as prior_CL for the CL parameter, it will plot them as well.

plot_predictions(): Plot predictions from posterior (or prior) simulations Requires as input a summarized simulation data.frame, e.g. obtained using sim_from_draws(post, summarize=TRUE)

prior_from_PKPDsim_model(): Get prior for Torsten from a PKPDsim model package

remap(): Remap named list or data.frame using a translation map

sim_from_draws(): Simulate from posterior or prior draws using PKPDsim::sim()

validate_stan_model(): Validate the numerical simulation properties of a Stan model vs the model written in PKPDsim.

write_stan_model(): Write a Stan model code to file